Publications: |
Published in refereed journals
- Liu, H., Keselj, V., Blouin, C., Biological Event Extraction using Subgraph Matching, Computational Intelligence,听in press.
- Langelaan DN, Wieczorek M, Blouin C, Rainey JK. Improved helix and kink characterization in membrane proteins allows evaluation of kink sequence predictors., J Chem Inf Model. 2010, 50(12):2213-20.
- Volkmann G, Murphy PW, Rowland EE, Cronan JE Jr, Liu XQ, Blouin C, Byers DM. Intein-mediated cyclization of bacterial acyl carrier protein stabilizes its folded conformation but does not abolish function. J Biol Chem. 2010 Jan 18
- Liu H., Blouin C., Keselj V. Identifying Interaction Sentences from Biological Literature Using Automatically Extracted Patterns. Data \& Knowledge Engineering, 2010, 69(1), 137-152.
- Blouin C., Perry S.,Lavell A., Susko E., Roger A.J. Reproducing the manual annotation of multiple sequence alignments using a SVM classifier, Bioinformatics, 23(25): p.3093-8.
- Parks, D.H., Porter, M., Wang, S., Churcher, S., Whalley, J., Blouin, C., Brooks, S. and Beiko, R.G. GenGIS: A Geospatial Information System for Genomic Data. Genome Research, 2009, 19:1896-1904.
- Hickey, G., Dehne, F., Rau-Chaplin, A., Blouin, C. SPR distance computations for unrooted trees. Evolutionary Bioinformatics, 2008, 4. 17-27.
- Jiang, H., Blouin, C. Insertions and the emergence of novel protein structure: a structure-based phylogenetic study of insertions. BMC Bioinformatics. 2007 Nov 15;8:444.
- Samuels, M.E., Higgins, B., Provost, S., Marcadier, J., Blouin, C., Bowman, S., Dube, M-P. 2007. New Technologies in human genetic analysis., American Biotechnology Laboratory, 25:22-28.
- Pepke, S.L., Butt, D., Nadeau, I., Roger, A.J. and Blouin C. (2007) Inferring Phylogenies by confidence set optimization., J Mol Evol. 64(1):80-9.
- Jiang, H., Blouin, C., 2006. Ab Initio Construction of All-atom Loop Conformations. J. Mol. Modeling, 12(2):221-8.
- Siddiqi, F, Bourque, J., Jiang, H., Gardner, M., St. Maurice, M., Blouin, C., and Bearne S.L., Perturbing the Hydrophobic Pocket of Mandelate Racemase to Probe Phenyl Motion During Catalysis. Biochemistry 44(25):9013-21
- Blouin, C., Butt, D., Roger, A.J. 2005. The impact of taxon sampling on the estimatio nof rate of evolution at sites. Mol. Biol. Evol., 22(3): 784-791.
- Butt, D., Roger, A.J., Blouin, C. 2005. libcov: A C++ bioinformatic library to manipulate protein structures, sequence alignments and phylogeny BMC Bioinformatics, 6: 138.
- Blouin, C. Butt, D. and Roger, A.J. 2004. Rapid evolution in conformational space: a study of loop regions in a ubiquitous GTP binding domain. Prot. Sci., 13:608-616.
- Blouin, C., Boucher, Y., and Roger, A.J. 2003. Inferring functional constraints and divergence in protein families using 3D mapping of phylogenetic information. Nucleic Acids Res 31: 790-797.
- Inagaki, Y., Blouin, C., Susko, E., and Roger, A.J. 2003. Assessing functional divergence in EF-1alpha and its paralogues in eukaryotes and archaebacteria. Nucleic Acids Res 31: 4227-4237.
- Shan Y, Milios E, Roger AJ, Blouin C and Susko E. 2003. Automatic recognition of regions of intrinsically poor multiple alignment. Proc. IEEE bioinformatics conference, San-Francisco, 482-483.
- Susko E, Field C, Blouin C and Roger AJ. 2003. Estimation of rate distribution in phylogenetic models., Syst. Biol, 52:594-603.
- Inagaki, Y., Blouin, C., Doolittle, W.F., and Roger, A.J. 2002. Convergence and constraint in eukaryotic release factor 1 (eRF1) domain 1: the evolution of stop codon specificity. Nucleic Acids Res 30: 532-544.
- Blouin, C., Guillemette, J.G., and Wallace, C.J. 2002. Probing electrostatic interactions in cytochrome c using site-directed chemical modification. Biochem Cell Biol 80: 197-203.
- Archibald, J.M., Blouin, C., and Doolittle, W.F. 2001. Gene duplication and the evolution of group II chaperonins: implications for structure and function. J Struct Biol 135: 157-169.
- Blouin, C., Guillemette, J.G., and Wallace, C.J. 2001. Resolving the individual components of a pH-induced conformational change. Biophys J 81: 2331-2338.
- Blouin, C., and Wallace, C.J. 2001. Protein matrix and dielectric effect in cytochrome c. J Biol Chem 276: 28814-28818.
- Bearne, S.L., and Blouin, C. 2000. Inhibition of Escherichia coli glucosamine-6-phosphate synthase by reactive intermediate analogues. The role of the 2-amino function in catalysis. J Biol Chem 275: 135-140.
Conference presentations
- Haibin Liu, Christian Blouin, and Vlado Keselj, Biological Event Extraction using Subgraph Matching, In Proceedings of SMBM脗麓10, Fourth International Symposium on Semantic Mining in Biomedicine, Hinxton, Cambridgeshire, UK, October 2010.
- Vlado Keselj, Haibin Liu, Norbert Zeh, Christian Blouin, Chris Whidden. Finding optimal parameters for Edit-distance based classification is NP-hard. StReBio'09, Paris, June 2009.
- Beiko, R., Whalley, J., Wing, S., Clair, H., Smolyn, G., Churcher, S., Porter, M., Blouin, C., Brooks, S. Spatial Analysis and Visualization of Genetic Biodiversity., Proc. for FOSS4G, Cape-town, S. Africa, 2008. p. 316-324.
- Liu, H, Blouin. C., Keselj, V. 2007. Supervised Method for Extracting Domain-specific Affixes in Biological
- Hickey, G., Dehne, F., Rau-Chaplin, A., Blouin, C. 2007. The Complexity of Unrooted SPR Distance., DOOM 2007, the New Zealand Phylogenetic Conference.
- C. Blouin, D. Butt, G. Hickey, A. Rau-Chaplin, 2006. Fast Parallel Maximum Likelihood-based Protein Phylogeny, 18th International Conference on Parallel and Distributed Computing Systems
- Shan, Y., Milios, E., Roger, A.J., Blouin, C. and Susko, E. 2003. Automatics recognition of regions of intrinsically poor multiple alignment. Proc. IEEE bioinformatics conference, San-Francisco. 482-483. Funding: .
- Blouin, C., Wallace C.J.A. Charge solvation inside proteins: Proposed rationale for the abnormal pK of heme propionate-6 of mitochondrial cytochrome c, FASEB JOURNAL 13 (7): A1393-A1393 Suppl.
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